{
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  "Title": "Spatial Uncertainty Propagation Analysis",
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  "Date": "2024-01-09",
  "Authors@R": "c(person(\"Kasia\", \"Sawicka\", email = \"katwic55@ceh.ac.uk\", role = c(\"aut\", \"cre\")),\nperson(\"Gerard\", \"Heuvelink\", email = \"gerard.heuvelink@wur.nl\", role = c(\"aut\")),\nperson(\"Dennis\", \"Walvoort\", email = \"dennis.walvoort@wur.nl\", role = c(\"aut\")),\nperson(\"Stefan\", \"van Dam\", email = \"stefan.vandam@wur.nl\", role = c(\"ctb\")),\nperson(\"Damiano\", \"Luzzi\", email = \"damiano.luzzi@wur.nl\", role = c(\"ctb\"))\n)",
  "Description": "Uncertainty propagation analysis in spatial environmental\nmodelling following methodology described in Heuvelink et al.\n(2007) <doi:10.1080/13658810601063951> and Brown and Heuvelink\n(2007) <doi:10.1016/j.cageo.2006.06.015>. The package provides\nfunctions for examining the uncertainty propagation starting\nfrom input data and model parameters, via the environmental\nmodel onto model outputs. The functions include uncertainty\nmodel specification, stochastic simulation and propagation of\nuncertainty using Monte Carlo (MC) techniques. Uncertain\nvariables are described by probability distributions. Both\nnumerical and categorical data types are handled. Spatial\nauto-correlation within an attribute and cross-correlation\nbetween attributes is accommodated for. The MC realizations may\nbe used as input to the environmental models called from R, or\nexternally.",
  "License": "GPL (>= 3)",
  "LazyData": "true",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/ksawicka/spup",
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  "Repository": "https://ksawicka.r-universe.dev",
  "Date/Publication": "2024-01-11 12:21:12 UTC",
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  "Author": "Kasia Sawicka [aut, cre],\nGerard Heuvelink [aut],\nDennis Walvoort [aut],\nStefan van Dam [ctb],\nDamiano Luzzi [ctb]",
  "Maintainer": "Kasia Sawicka <katwic55@ceh.ac.uk>",
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  "_topics": [
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    "spatial",
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  "_realowner": "ksawicka",
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    "executable",
    "genSample",
    "list_depth",
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    "propagate",
    "quantile_MC_sgdf",
    "render",
    "sd_MC_sgdf",
    "template",
    "var_MC_sgdf",
    "varcov"
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      "title": "Digital Elevation Model of Zlatibor region in Serbia.",
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      ],
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      "table": false,
      "tojson": false
    },
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      "title": "Standard deviation of Digital Elevation Model of Zlatibor region in Serbia.",
      "object": "dem30m_sd",
      "class": [
        "SpatialGridDataFrame"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
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      "title": "Soil organic carbon content in a south area (33 x 33km) of lake Alaotra in Madagascar.",
      "object": "OC",
      "class": [
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      ],
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      "tojson": false
    },
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      "object": "OC_sd",
      "class": [
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      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "TN",
      "title": "Soil total nitrogen content in a south area (33 x 33km) of lake Alaotra in Madagascar.",
      "object": "TN",
      "class": [
        "RasterLayer"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "TN_sd",
      "title": "Standard deviation of soil total nitrogen content in a south area (33 x 33km) of lake Alaotra in Madagascar.",
      "object": "TN_sd",
      "class": [
        "RasterLayer"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
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      "title": "Neighbourhood in Rotterdam.",
      "object": "woon",
      "class": [
        "SpatialPolygonsDataFrame"
      ],
      "fields": [],
      "table": false,
      "tojson": false
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  "_help": [
    {
      "page": "check_distribution",
      "title": "Simple check if distribution provided in defineUM() belongs to a list of supported distributions.",
      "topics": [
        "check_distribution"
      ]
    },
    {
      "page": "check_if_Spatial",
      "title": "Simple check if class of provided object is Spatial",
      "topics": [
        "check_if_Spatial"
      ]
    },
    {
      "page": "crm2vgm",
      "title": "Converting a spatial correlogram model to a variogram model",
      "topics": [
        "crm2vgm"
      ]
    },
    {
      "page": "defineMUM",
      "title": "Define Mulivariate Uncertainty Model",
      "topics": [
        "defineMUM"
      ]
    },
    {
      "page": "defineUM",
      "title": "Define an uncertainty model for a single variable",
      "topics": [
        "defineUM"
      ]
    },
    {
      "page": "dem30m",
      "title": "Digital Elevation Model of Zlatibor region in Serbia.",
      "topics": [
        "dem30m"
      ]
    },
    {
      "page": "dem30m_sd",
      "title": "Standard deviation of Digital Elevation Model of Zlatibor region in Serbia.",
      "topics": [
        "dem30m_sd"
      ]
    },
    {
      "page": "distribution_sampling",
      "title": "Sampling from a given distribution",
      "topics": [
        "distribution_sampling"
      ]
    },
    {
      "page": "distribution_sampling_raster",
      "title": "Sampling from a given distribution",
      "topics": [
        "distribution_sampling_raster"
      ]
    },
    {
      "page": "executable",
      "title": "Wrapper function for calling executables in R",
      "topics": [
        "executable"
      ]
    },
    {
      "page": "find_strata",
      "title": "Sampling from a given distribution",
      "topics": [
        "find_strata"
      ]
    },
    {
      "page": "genSample",
      "title": "Methods for generating Monte Carlo realizations from uncertain inputs.",
      "topics": [
        "genSample"
      ]
    },
    {
      "page": "genSample.JointNumericSpatial",
      "title": "Generating Monte Carlo sample from a list of uncertain objects that are cross-correlated.",
      "topics": [
        "genSample.JointNumericSpatial"
      ]
    },
    {
      "page": "genSample.JointScalar",
      "title": "Generating sample from cross-correlated variables described by a scalar.",
      "topics": [
        "genSample.JointScalar"
      ]
    },
    {
      "page": "genSample.MarginalCategoricalSpatial",
      "title": "Generating Monte Carlo sample from an uncertain object of a class 'MarginalCategoricalSpatial'",
      "topics": [
        "genSample.MarginalCategoricalSpatial"
      ]
    },
    {
      "page": "genSample.MarginalNumericSpatial",
      "title": "Generating Monte Carlo sample from an uncertain object of a class 'MarginalNumericSpatial'",
      "topics": [
        "genSample.MarginalNumericSpatial"
      ]
    },
    {
      "page": "genSample.MarginalScalar",
      "title": "Generating Monte Carlo sample from an uncertain object of a class 'MarginalScalar'",
      "topics": [
        "genSample.MarginalScalar"
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    },
    {
      "page": "list_depth",
      "title": "Function to find the level of list nesting",
      "topics": [
        "list_depth"
      ]
    },
    {
      "page": "makeCRM",
      "title": "Defining a spatial correlogram model",
      "topics": [
        "makeCRM",
        "makecrm"
      ]
    },
    {
      "page": "mean_MC_sgdf",
      "title": "mean() function for MC sample saved in a SpatialGridDataFrame",
      "topics": [
        "mean_MC_sgdf"
      ]
    },
    {
      "page": "OC",
      "title": "Soil organic carbon content in a south area (33 x 33km) of lake Alaotra in Madagascar.",
      "topics": [
        "OC"
      ]
    },
    {
      "page": "OC_sd",
      "title": "Standard deviation of soil organic carbon content in a south area (33 x 33km) of lake Alaotra in Madagascar.",
      "topics": [
        "OC_sd"
      ]
    },
    {
      "page": "plot.SpatialCorrelogramModel",
      "title": "Plots correlogram model",
      "topics": [
        "plot.SpatialCorrelogramModel"
      ]
    },
    {
      "page": "print.template",
      "title": "Print method for class \"template.\"",
      "topics": [
        "print.template"
      ]
    },
    {
      "page": "propagate",
      "title": "Propagation function",
      "topics": [
        "propagate"
      ]
    },
    {
      "page": "quantile_MC_sgdf",
      "title": "quantile() function for MC sample saved in a SpatialGridDataFrame",
      "topics": [
        "quantile_MC_sgdf"
      ]
    },
    {
      "page": "render",
      "title": "Rendering template",
      "topics": [
        "render"
      ]
    },
    {
      "page": "render.character",
      "title": "Render method for \"character\" class.",
      "topics": [
        "render.character"
      ]
    },
    {
      "page": "render.template",
      "title": "Render method for \"template\" class.",
      "topics": [
        "render.template"
      ]
    },
    {
      "page": "sd_MC_sgdf",
      "title": "sd() function for MC sample saved in a SpatialGridDataFrame",
      "topics": [
        "sd_MC_sgdf"
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    },
    {
      "page": "spup--pkg",
      "title": "spup - Package for spatial uncertainty propagation",
      "topics": [
        "spup--pkg",
        "_PACKAGE"
      ]
    },
    {
      "page": "stratsamp",
      "title": "Stratified sampling for spatial variables",
      "topics": [
        "stratsamp"
      ]
    },
    {
      "page": "template",
      "title": "Constructor for class \"template\".",
      "topics": [
        "template"
      ]
    },
    {
      "page": "TN",
      "title": "Soil total nitrogen content in a south area (33 x 33km) of lake Alaotra in Madagascar.",
      "topics": [
        "TN"
      ]
    },
    {
      "page": "TN_sd",
      "title": "Standard deviation of soil total nitrogen content in a south area (33 x 33km) of lake Alaotra in Madagascar.",
      "topics": [
        "TN_sd"
      ]
    },
    {
      "page": "var_MC_sgdf",
      "title": "var() function for MC sample saved in a SpatialGridDataFrame",
      "topics": [
        "var_MC_sgdf"
      ]
    },
    {
      "page": "varcov",
      "title": "Calculate variance covariance matrix",
      "topics": [
        "varcov"
      ]
    },
    {
      "page": "vgm2crm",
      "title": "Convert vgm to crm",
      "topics": [
        "vgm2crm"
      ]
    },
    {
      "page": "woon",
      "title": "Neighbourhood in Rotterdam.",
      "topics": [
        "woon"
      ]
    }
  ],
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      "source": "ExternalModel_v2.Rmd",
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      "title": "Spatial Uncertainty Propagation Analysis",
      "author": "Kasia Sawicka and Dennis Walvoort",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Case study with calling external model",
        "Introduction",
        "Monte Carlo methodology for uncertainty analysis",
        "Uncertainty propagation analysis with 'spup'",
        "Modify ASCII input files - rendering",
        "Running external models",
        "Acknowledgements"
      ],
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      "title": "Spatial Uncertainty Propagation Analysis",
      "author": "Kasia Sawicka and Gerard Heuvelink",
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        "Case study with categorical data - calculating tax depending on a building function",
        "Introduction",
        "Adapted Monte Carlo methodology for spatial uncertainty analysis with a categorical variable",
        "Building function uncertainty propagation analysis with 'spup'",
        "Preliminaries - load and view the data",
        "Define uncertainty model (UM) for the building function",
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      "title": "Spatial Uncertainty Propagation Analysis",
      "author": "Kasia Sawicka and Gerard Heuvelink",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Case study with cross-correlated variables",
        "Introduction/Problem definition",
        "Monte Carlo methodology for spatial uncertainty analysis with spatially cross-correlated variables",
        "C/N uncertainty propagation analysis with 'spup'",
        "Preliminaries - load and view the data",
        "Define uncertainty model (UM) for the cross-correlated OC and TN",
        "Generate possible realities of OC and TN",
        "Uncertainty propagation through the model that calculates C/N ratio",
        "Visualization of results",
        "Acknowledgements",
        "References"
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      "modified": "2018-07-17 09:35:48",
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      "title": "Spatial Uncertainty Propagation Analysis",
      "author": "Kasia Sawicka and Gerard Heuvelink",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Case study with spatially variable standard deviation - slope calculations",
        "Introduction/Problem definition",
        "Monte Carlo methodology for spatial uncertainty analysis with spatially variable sd",
        "DEM uncertainty propagation analysis with 'spup'",
        "Preliminaries - load and view the data",
        "Define uncertainty model (UM) for elevation",
        "Generate possible realities of DEM",
        "Uncertainty propagation through the model that calculates slope using elevation as input",
        "Visualization of results",
        "Acknowledgements",
        "References"
      ],
      "created": "2017-02-08 13:21:42",
      "modified": "2018-07-17 09:36:16",
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